PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_152.36
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family WRKY
Protein Properties Length: 633aa    MW: 68567 Da    PI: 7.1276
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_152.36genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.2e-30361419259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                    Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  evm.model.supercontig_152.36 361 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRSILITTYEGNHNHP 419
                                   7*********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-33345421IPR003657WRKY domain
SuperFamilySSF1182909.81E-28353421IPR003657WRKY domain
PROSITE profilePS5081129.516355421IPR003657WRKY domain
SMARTSM007744.7E-37360420IPR003657WRKY domain
PfamPF031061.4E-26362419IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080169Biological Processcellular response to boron-containing substance deprivation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MERGWGTLTL DSSDPLTTAA AASPFFSTKK PPPSPSPPAS LRSFFSDEKP IRDMFPQFPV  60
SLGRDQRRQT PPTSSSGDTP MSVNEVDFFN SDHRHSKQQR AAGSDRDGVK SNGAVPGANI  120
KKEIVSSHVD DNQDGARDVN IGLHLLTTNT GSDQSTVDDG GLSDMEDKRA KTTELAKLQV  180
ELQRMNVENQ RLKEMLTQVT GNYNALQMHL VTLMAQQQHE AESTQRLNIV EAKPEEKKKQ  240
DAMVPRQFIE LGPSPTTLET DELSHSSSDE RTRSGSPPRN IEAVSNHSVE KEEIAPFDHN  300
SGKRLGRDES PDSDGWGLNK AQKLNNNSSS KGIDHQSATT EANMRKARVS VRARSEAPMI  360
TDGCQWRKYG QKMAKGNPCP RAYYRCTMAV GCPVRKQVQR CAEDRSILIT TYEGNHNHPL  420
PPAAMAMAST TAAAASMLLS GSMSSAEGLM NPNLLARAIL PCSSSMATIS ASAPFPTITL  480
DLTNNPNPLQ FQRLPTQFQV PNLPQNFGSV TPQVFNQALY NQSKFSGLQL SNQDHQMGNS  540
SHLSHQSPPL SVIHPSSLQQ QQQSPNSLAD TVTATAAAIT ADPNFTVALA AAITSIINGN  600
NVHPTIAATT ANNNNNNNNN NNNNNISTSN TQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-22347423176WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00209DAPTransfer from AT1G62300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007026134.10.0WRKY family transcription factor
SwissprotQ9C5191e-160WRKY6_ARATH; WRKY transcription factor 6
TrEMBLA0A061GGS50.0A0A061GGS5_THECC; WRKY family transcription factor
STRINGPOPTR_0004s00890.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105728107
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-143WRKY family protein